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UA (Gene Alexander) MRI SPM voxel based morphometry (VBM) analysis

Source: R/data.R
UASPMVBM.Rd

UA (Gene Alexander) MRI SPM voxel based morphometry (VBM) analysis data. More information is available at https://adni.loni.usc.edu/data-samples/adni-data/

Usage

data(UASPMVBM)

Format

A data frame with 4091 observations and 128 variables.

Source

https://adni.loni.usc.edu/data-samples/adni-data/

Details

  • ORIGPROT character Original study protocol , with options: ADNI1

  • ID numeric Range value: 1, ..., 4091

  • RID numeric Range value: 3, ..., 1435

  • SITEID numeric Range value: 1, ..., 127

  • VISCODE character , with options: sc, m06, m12, bl, f

  • USERDATE Date: YYY-MM-DD

  • RECNO numeric 1 = 1.5T cross-sectional screen ; 2 = 1.5T MO_06 longitudinal ; 3 = 1.5T MO_12 longitudinal ; 4 = 3T cross-sectional baseline ; 5 = 3T MO_06 longitudinal ; 6 = 3T MO_12 longitudinal

  • EXAMDATE Date: YYY-MM-DD

  • IMAGEUID numeric imageUID Range value: 31084, ..., 125949

  • FLDSTRENG numeric Field Strength Range value: 1.5, ..., 3

  • PRECENTL numeric Precentral_L. 1) Mean gray matter values extracted from 1.5T ADNI MPRAGE MRI segmented gray matter maps using longitudinal voxel based morphometry (VBM) processing steps (Chetelat et al., Neuroimage, 2005, 27:934-946) adapted for SPM5 with customized tissue-specific priors derived from a representative sample of 300 ADNI subjects (ADNI300). The regions of interest (ROI) were defined by Anatomical Automatic Labeling (AAL, Tzourio-Mazoyer et al., Neuroimage, 2002, 15:273-89, http://www.cyceron.fr/freeware/) after warping the standard AAL ROI template into the customized sample-specific ADNI300 template space. The ADNI300-customized AAL ROI template was applied to spatially normalized and segmented SPM5 gray matter maps for the longitudinal VBM generated baseline and 6 month (indicated by RECNO=2) or 12 month (indicated by RECNO=3) follow up scans without Gaussian smoothing to reduce averaging across regional borders. 2) The ADNI300 template was created from AD, MCI, and Normal subjects proportional to the distribution of these subject groups enrolled in the whole ADNI study and the groups were matched in age and gender. 3) Regional values will be subject to change due to study alterations in image pre- or post-processing, inclusion of additional analysis time points, and/or modifications or updates in image analysis procedures. 4) SPM analyses were performed by ADNI Analysis Team Members: Gene E. Alexander, Ph.D., Kewei Chen, Ph.D., and Eric M. Reiman, M.D. Range value: 0.109464, ..., 0.519062

  • PRECENTR numeric Precentral_R Range value: 0.087301, ..., 0.519366

  • FRONTSUPL numeric Frontal_Sup_L Range value: 0.072548, ..., 0.572452

  • FRONTSUPR numeric Frontal_Sup_R Range value: 0.06832, ..., 0.495008

  • FRONTSORBL numeric Frontal_Sup_Orb_L Range value: 0.079956, ..., 0.664292

  • FRONTSORBR numeric Frontal_Sup_Orb_R Range value: 0.070114, ..., 0.646994

  • FRONTMIDL numeric Frontal_Mid_L Range value: 0.093176, ..., 0.60747

  • FRONTMIDR numeric Frontal_Mid_R Range value: 0.0698, ..., 0.626904

  • FRTMIDORBL numeric Frontal_Mid_Orb_L Range value: 0.073239, ..., 0.75648

  • FRTMIDORBR numeric Frontal_Mid_Orb_R Range value: 0.061234, ..., 0.745696

  • FRONTINOPL numeric Frontal_Inf_Oper_L Range value: 0.131869, ..., 0.626053

  • FRONTINOPR numeric Frontal_Inf_Oper_R Range value: 0.115524, ..., 0.628719

  • FRONTINTRL numeric Frontal_Inf_Tri_L Range value: 0.139826, ..., 0.563734

  • FRONTINTRR numeric Frontal_Inf_Tri_R Range value: 0.110499, ..., 0.569364

  • FRONTINOBL numeric Frontal_Inf_Orb_L Range value: 0.113868, ..., 0.750045

  • FRONTINOBR numeric Frontal_Inf_Orb_R Range value: 0.092592, ..., 0.696247

  • ROLANDOPL numeric Rolandic_Oper_L Range value: 0.152697, ..., 0.668278

  • ROLANDOPR numeric Rolandic_Oper_R Range value: 0.163112, ..., 0.689594

  • SUPMOTORL numeric Supp_Motor_Area_L Range value: 0.083472, ..., 0.622019

  • SUPMOTORR numeric Supp_Motor_Area_R Range value: 0.113827, ..., 0.607832

  • OLFACTL numeric Olfactory_L Range value: 0.171352, ..., 0.813431

  • OLFACTR numeric Olfactory_R Range value: 0.172559, ..., 0.758829

  • FRONTSMEDL numeric Frontal_Sup_Medial_L Range value: 0.074001, ..., 0.581061

  • FRONTSMEDR numeric Frontal_Sup_Medial_R Range value: 0.084855, ..., 0.660669

  • FRTMEDORBL numeric Frontal_Med_Orb_L Range value: 0.129765, ..., 0.845215

  • FRTMEDORBR numeric Frontal_Med_Orb_R Range value: 0.150819, ..., 0.810541

  • RECTUSL numeric Rectus_L Range value: 0.136071, ..., 0.755095

  • RECTUSR numeric Rectus_R Range value: 0.15509, ..., 0.742195

  • INSULAL numeric Insula_L Range value: 0.159247, ..., 0.76472

  • INSULAR numeric Insula_R Range value: 0.149596, ..., 0.760286

  • CINGANTL numeric Cingulum_Ant_L Range value: 0.130653, ..., 0.660412

  • CINGANTR numeric Cingulum_Ant_R Range value: 0.200086, ..., 0.667653

  • CINGMIDL numeric Cingulum_Mid_L Range value: 0.203155, ..., 0.648047

  • CINGMIDR numeric Cingulum_Mid_R Range value: 0.227015, ..., 0.736913

  • CINGPOSTL numeric Cingulum_Post_L Range value: 0.141583, ..., 0.730277

  • CINGPOSTR numeric Cingulum_Post_R Range value: 0.120043, ..., 0.623823

  • HIPPL numeric Hippocampus_L Range value: 0.195745, ..., 0.862557

  • HIPPR numeric Hippocampus_R Range value: 0.079445, ..., 0.838027

  • PARAHIPPL numeric ParaHippocampal_L Range value: 0.194895, ..., 0.785074

  • PARAHIPPR numeric Range value: 0.269733, ..., 0.811848

  • AMYGDL numeric Range value: 0.125053, ..., 0.970368

  • AMYGDR numeric Amygdala_R Range value: 0.157966, ..., 0.860282

  • CALCARINEL numeric Calcarine_L Range value: 0.135687, ..., 0.776054

  • CALCARINER numeric Calcarine_R Range value: 0.142091, ..., 0.721373

  • CUNEUSL numeric Range value: 0.106092, ..., 0.711471

  • CUNEUSR numeric Range value: 0.120579, ..., 0.694838

  • LINGUALL numeric Range value: 0.2063, ..., 0.734729

  • LINGUALR numeric Range value: 0.180107, ..., 0.715062

  • OCCSUPL numeric Range value: 0.100288, ..., 0.558346

  • OCCSUPR numeric Range value: 0.110552, ..., 0.547554

  • OCCMIDL numeric Range value: 0.149659, ..., 0.69116

  • OCCMIDR numeric Range value: 0.128717, ..., 0.671495

  • OCCINFL numeric Range value: 0.15837, ..., 0.783026

  • OCCINFR numeric Range value: 0.105393, ..., 0.814613

  • FUSIFORML numeric Range value: 0.243454, ..., 0.814792

  • FUSIFORMR numeric Range value: 0.214296, ..., 0.806602

  • POSTCENTL numeric Range value: 0.132477, ..., 0.539285

  • POSTCENTR numeric Range value: 0.098583, ..., 0.525414

  • PARIETSUPL numeric Range value: 0.106263, ..., 0.645473

  • PARIETSUPR numeric Range value: 0.082337, ..., 0.599451

  • PARIETINFL numeric Range value: 0.161056, ..., 0.660393

  • PARIETINFR numeric Range value: 0.1459, ..., 0.691876

  • SUPRAMARGL numeric Range value: 0.200084, ..., 0.687163

  • SUPRAMARGR numeric Range value: 0.152732, ..., 0.625606

  • ANGULARL numeric Range value: 0.178645, ..., 0.71849

  • ANGULARR numeric Range value: 0.15023, ..., 0.641721

  • PRECUNEUSL numeric Range value: 0.152047, ..., 0.633392

  • PRECUNEUSR numeric Range value: 0.164068, ..., 0.710013

  • PARCENTLBL numeric Range value: 0.081076, ..., 0.550229

  • PARCENTLBR numeric Range value: 0.095236, ..., 0.600817

  • CAUDATEL numeric Range value: 0.101717, ..., 0.757027

  • CAUDATER numeric Range value: 0.128286, ..., 0.719425

  • PUTAMENL numeric Range value: 0.23163, ..., 0.857368

  • PUTAMENR numeric Range value: 0.241973, ..., 0.752296

  • PALLIDUML numeric Range value: 0.025142, ..., 0.584371

  • PALLIDUMR numeric Range value: 0.001927, ..., 0.636137

  • THALAMUSL numeric Range value: 0.159741, ..., 0.583169

  • THALAMUSR numeric Range value: 0.13538, ..., 0.611456

  • HESCHLL numeric Range value: 0.123076, ..., 0.703712

  • HESCHLR numeric Range value: 0.094019, ..., 0.605857

  • TEMPSUPL numeric Range value: 0.213788, ..., 0.643675

  • TEMPSUPR numeric Range value: 0.152122, ..., 0.618064

  • TEMPPLSUPL numeric Range value: 0.130266, ..., 0.721552

  • TEMPPLSUPR numeric Range value: 0.103663, ..., 0.641147

  • TEMPMIDL numeric Range value: 0.216623, ..., 0.677134

  • TEMPMIDR numeric Range value: 0.166822, ..., 0.679876

  • TEMPPLMIDL numeric Range value: 0.088095, ..., 0.800392

  • TEMPPLMIDR numeric Range value: 0.071037, ..., 0.723863

  • TEMPINFL numeric Range value: 0.190501, ..., 0.710179

  • TEMPINFR numeric Range value: 0.147539, ..., 0.749946

  • CEREBCR1L numeric Range value: 0.227836, ..., 0.800763

  • CEREBCR1R numeric Range value: 0.176948, ..., 0.825526

  • CEREBCR2L numeric Range value: 0.181098, ..., 1.47167

  • CEREBCR2R numeric Range value: 0.156126, ..., 1.1756

  • CEREB3L numeric Range value: 0.175525, ..., 0.800511

  • CEREB3R numeric Range value: 0.182603, ..., 0.682015

  • CEREB45L numeric Range value: 0.297412, ..., 0.78897

  • CEREB45R numeric Range value: 0.341734, ..., 0.858938

  • CEREB6L numeric Range value: 0.360521, ..., 0.912022

  • CEREB6R numeric Range value: 0.36296, ..., 0.859137

  • CEREB7BL numeric Range value: 0.22627, ..., 1.84525

  • CEREB7BR numeric Range value: 0.189325, ..., 1.63047

  • CEREB8L numeric Range value: 0.243068, ..., 2.01657

  • CEREB8R numeric Range value: 0.218044, ..., 1.68857

  • CEREB9L numeric Range value: 0.260033, ..., 1.40136

  • CEREB9R numeric Range value: 0.126837, ..., 1.1916

  • CEREB10L numeric Range value: 0.075762, ..., 0.71962

  • CEREB10R numeric Range value: 0.10381, ..., 0.752279

  • VERMIS12 numeric Range value: 0.08083, ..., 0.818248

  • VERMIS3 numeric Range value: 0.155702, ..., 0.796297

  • VERMIS45 numeric Range value: 0.207042, ..., 0.710177

  • VERMIS6 numeric Range value: 0.187682, ..., 0.841051

  • VERMIS7 numeric Range value: 0.210638, ..., 0.79367

  • VERMIS8 numeric Range value: 0.286865, ..., 0.994217

  • VERMIS9 numeric Range value: 0.365639, ..., 0.956039

  • VERMIS10 numeric Range value: 0.042025, ..., 0.684707

  • ETIV numeric Range value: 1.33109, ..., 2.62237

  • update_stamp POSIXct: YYY-MM-DD

Author

adni-data@googlegroups.com