ApoE Genotyping - Draw Data data. More information is available at https://adni.loni.usc.edu/data-samples/adni-data/
Usage
data(GENETIC)Details
ORIGPROT character Original study protocol , with options: ADNI1, ADNIGO, ADNI2, ADNI3, ADNI4
COLPROT factor Study protocol of data collection , with levels: ADNI1, ADNIGO, ADNI2, ADNI3, ADNI4
PTID character Participant ID
RID numeric Participant roster ID Range value: 2, ..., 10819
VISCODE character Visit code
VISCODE2 character Translated visit code
VISDATE Assessment COLLDATE when present; otherwise Registry EXAMDATE Date: YYY-MM-DD
RECNO numeric Range value: 1, ..., 4
APCOLLECT character On this date, was Whole blood long read sequencing collected (1x3 mL Purple-Top EDTA tube)?
ADNIGO, ADNI2: 1=Yes ; 0=No
ADNI3, ADNI4: 0=No ; 1=Yes
Decoded Value: Yes
DNAREASON character If no, indicate reason
ADNI2, ADNI3, ADNI4: 1=Illness ; 2=Participant unavailable ; 3=Participant unwilling ; 4=Administrative problems ; 5=Withdrawn consent ; 6=DNA sample previously collected ; 7=Other (specify)
ADNI4: 1=Illness ; 2=Participant unavailable ; 3=Participant unwilling ; 4=Administrative problems ; 5=Withdrawn consent ; 7=Other (specify)
Decoded Value: Yes
APTIME Time of blood collection (24hr clock) hms: HH-MM-SS
APVOLUME numeric If Whole Blood for long read sequencing collected, volume of tube (1 x 3mL Purple-Top EDTA tube):
ADNI1, ADNIGO, ADNI2: 1..10
ADNI3, ADNI4
WBLDVOL1 numeric Volume of aliquots created 1.5mL WBLD #1: Range value: 0, ..., 1.5
WBLDVOL2 numeric Volume of aliquots created 1.5mL WBLD #2: Range value: 0, ..., 1.5
WBLDFROZT Time long read sequencing was placed in freezer(24hr clock): hms: HH-MM-SS
RNACOLL character On this date, was RNA sample collected (2 x 2.5 mL PAXgene RNA tubes)?
ADNIGO, ADNI2: 1=Yes ; 0=No
ADNI3, ADNI4: 0=No ; 1=Yes
Decoded Value: Yes
RNAREASON character If no, indicate reason 1=Illness ; 2=Participant unavailable ; 3=Participant unwilling ; 4=Administrative problems ; 5=Withdrawn consent ; 7=Other (specify) Decoded Value: Yes
RNADATE Date of RNA collection: Date: YYY-MM-DD
RNATIME Time of RNA collection (24hr clock): hms: HH-MM-SS
RNAVOL numeric Volume of blood drawn into 3 x 2.5 mL PAXgene RNA Tubes
ADNIGO, ADNI2: 1..8
ADNI3
RNAVOL1 numeric If RNA collected, volume of tubes (2.5mL PAXgene™ RNA tubes): RNA #1 Range value: 1, ..., 2.5
RNAVOL2 numeric If RNA collected, volume of tubes (2.5mL PAXgene™ RNA tubes): RNA #2 Range value: 0, ..., 2.5
RNASHIP character Was this sample shipped ambient? 0=No ; 1=Yes Decoded Value: Yes
RNAFROZT If Frozen, Time RNA placed in freezer (24hr clock): hms: HH-MM-SS
BCOAT character On this date, was Buffy Coat extracted from 2 x 10mL EDTA biomarker collection tubes?
ADNI2: 1=Yes ; 0=No
ADNI3, ADNI4: 0=No ; 1=Yes
Decoded Value: Yes
BCREASON character If No, please provide reason why the Buffy Coat was not extracted 1=Biomarker not collected ; 2=Inadequate biomarker sample ; 3=Withdrawn consent ; 4=Other (specify) Decoded Value: Yes
BCVOL numeric If Buffy Coat extracted, volume of aliquot
ADNI2: 0..99
ADNI3
BCVOL1 numeric If plasma and buffy coat collection tubes drawn, volume of tubes (10mL Purple-Top EDTA tubes): EDTA #1 Range value: 1, ..., 10
BCVOL2 numeric If plasma and buffy coat collection tubes drawn, volume of tubes (10mL Purple-Top EDTA tubes): EDTA #2 Range value: 0, ..., 10
BCEXTVOL1 numeric If Buffy Coat extracted, volume of aliquots: Buffy Coat #1: Range value: 0.1, ..., 2
BCEXTVOL2 numeric If Buffy Coat extracted, volume of aliquots: Buffy Coat #2: Range value: 0, ..., 2
BCSHIP character Was this sample shipped ambient? 0=No ; 1=Yes Decoded Value: Yes
BCFROZT If Frozen, time Buffy Coat placed in freezer (24hr clock): hms: HH-MM-SS
RBCCOLL character On this date, was RBC extracted from biomarker collection tube? 0=No ; 1=Yes Decoded Value: Yes
RBCTUBE numeric If RBC collected, total number of aliquot tubes Range value: 1, ..., 2
RBCALIQ1 numeric RBC aliquot 1 volume (2.0 mL tube) Range value: 0.1, ..., 2
RBCALIQ2 numeric RBC aliquot 2 volume (4.0 mL tube) Range value: 0, ..., 5
RBCFROZT If RBC collected, time placed in freezer hms: HH-MM-SS
PBMCCOLL character On this date, was PBMC sample collected (2 x 10mL Sodium Heparin tubes)? 0=No ; 1=Yes Decoded Value: Yes
PBMCREASON character If no, indicate reason
ADNI4: 1=Illness ; 2=Participant unavailable ; 3=Participant unwilling ; 4=Administrative problems ; 5=Withdrawn consent ; 7=Other (specify)
ADNI4: 1=Illness ; 2=Participant unavailable ; 3=Participant unwilling ; 4=Administrative problems ; 5=Withdrawn consent ; 6=Already collected in ADNI3 ; 7=Other (specify)
Decoded Value: Yes
PBMCVOL numeric If PBMC collected, volume Range value: 2, ..., 10
PBMCTIME Time of PBMC collection (24hr clock): hms: HH-MM-SS
PBMCVOL1 numeric If PBMC collected, volume of tubes: PBMC #1: Range value: 1, ..., 10
PBMCVOL2 numeric If PBMC collected, volume of tubes: PBMC #2: Range value: 0, ..., 10
CLDATE Date of cell immortalization collection Date: YYY-MM-DD
CLCOLL character On this date, was cell immortalization sample collected?
ADNI2: 1=Yes ; 0=No
ADNI3: 0=No ; 1=Yes
Decoded Value: Yes
CLREASON character If no, indicate reason 1=Illness ; 2=Participant unavailable ; 3=Participant unwilling ; 4=Administrative problems ; 5=Withdrawn consent ; 6=Other (specify) Decoded Value: Yes
CLTIME Time of cell immortalization collection (24hr clock) hms: HH-MM-SS
CLVOLUME numeric Total volume of blood drawn for cell immortalization into 2 x 8.5 mL ACD-A (yellow top) tubes Range value: -1, ..., 20
GENFEDDATE character Date FedExed
ID numeric Record ID Range value: 5, ..., 186976
SITEID numeric Site ID Range value: 1, ..., 941
USERDATE User Create Date Date: YYY-MM-DD
USERDATE2 User Last Modify Date Date: YYY-MM-DD
DD_CRF_VERSION_LABEL character CRF Version Label , with options: init, bl, annual
LANGUAGE_CODE character Language Code e=English Decoded Value: Yes
HAS_QC_ERROR character Has Quality Check Error 0=Does not have QC error or QC error has been approved ; 1=Has QC error Decoded Value: Yes
update_stamp POSIXct: YYY-MM-DD